1NI3

Structure of the Schizosaccharomyces pombe YchF GTPase

Structural Biology Knowledgebase: 1NI3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.213

Literature

Macromolecules
Sequence Display for 1NI3

Classification: HYDROLASE

Total Structure Weight: 44866.60

Macromolecule Entities
Molecule Chains Length Organism Details
YchF GTP-binding protein A 392 Schizosaccharomyces pombe Mutation: M1M, M28M, M179M, M233M, M265M, M293M, M350M, M379M
Gene Name(s): SPAC27E2.03c
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.213
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 130.24 α = 90.00
b = 130.24 β = 90.00
c = 66.23 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-12-20
  • Released Date: 2003-01-07
  • Deposition author(s): Kniewel, R.K., Buglino, J.A., Lima, C.D., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4