1NGW

Chimeric Affinity Matured Fab 7g12 complexed with mesoporphyrin

Structural Biology Knowledgebase: 1NGW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.318
  • R-Value Work: 0.275

Literature

Macromolecules
Sequence Display for 1NGW

Classification: IMMUNE SYSTEM

Total Structure Weight: 94220.27

Macromolecule Entities
Molecule Chains Length Organism Details
Mature Metal Chelatase Catalytic Antibody, Light chain A, L 213 Homo sapiens Mus musculus Fragment: germline Fab fragment
Mature Metal Chelatase Catalytic Antibody, Heavy chain B, H 216 Homo sapiens Mus musculus Fragment: germline Fab fragment
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MMP
Query on MMP

B, H N-METHYLMESOPORPHYRIN
C35 H40 N4 O4
YNWHQWMCLCANDI-YIYRCNGCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
MMP N/A in BindingDB
N/A in BindingMoad
Kd: 20.7 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.318
  • R-Value Work: 0.275
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 100.72 α = 90.00
b = 134.21 β = 90.00
c = 72.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-12-18
  • Released Date: 2003-02-04
  • Deposition author(s): Yin, J., Andryski, S.E., Beuscher IV, A.E., Stevens, R.C., Schultz, P.G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4