1NFG

Structure of D-hydantoinase

Structural Biology Knowledgebase: 1NFG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.220

Literature

Macromolecules
Sequence Display for 1NFG

Classification: HYDROLASE

Total Structure Weight: 200684.28

Macromolecule Entities
Molecule Chains Length Organism Details
D-hydantoinase A, B, C, D 457 Ralstonia pickettii EC#: 3.5.2.2 IUBMB
Mutation: K148X
Gene Name(s): hyuA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
KCX
Query on KCX
A, B, C, D L-PEPTIDE LINKING C7 H14 N2 O4 LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.220
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 68.70 α = 90.00
b = 170.50 β = 95.20
c = 87.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-12-14
  • Released Date: 2003-07-15
  • Deposition author(s): Xu, Z., Yang, Y., Jiang, W., Arnold, E., Ding, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4