1NEX

Crystal Structure of ScSkp1-ScCdc4-CPD peptide complex

Structural Biology Knowledgebase: 1NEX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.239

Literature

Macromolecules
Sequence Display for 1NEX

Classification: LIGASE CELL CYCLE

Total Structure Weight: 147664.63

Macromolecule Entities
Molecule Chains Length Organism Details
Centromere DNA-binding protein complex CBF3 subunit D A, C 169 Saccharomyces cerevisiae Fragment: residues 36-63 deleted
Mutation: M1M, M36M, ΔH36, ΔD37, ΔS38, ΔN39, ΔL40, ΔQ41, ΔN42, ΔN43, ΔS44, ΔD45, ΔS46, ΔE47, ΔS48, ΔD49, ΔS50, ΔD51, ΔS52, ΔE53, ΔT54, ΔN55, ΔH56, ΔK57, ΔS58, ΔK59, ΔD60, ΔN61, ΔN62, ΔN63, M77M, M130M, M157M
Gene Name(s): SKP1 Gene View CBF3D YDR328C D9798.14
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
CDC4 protein B, D 464 Saccharomyces cerevisiae Fragment: residues 601-604 and 609-624 deleted
Mutation: M381M, M403M, M530M, M560M, M590M, ΔN601, ΔI602, ΔW603, ΔN604, C608L, ΔS609, ΔY610, ΔA611, ΔT612, ΔN613, ΔS614, ΔA615, ΔS616, ΔP617, ΔC618, ΔA619, ΔK620, ΔI621, ΔG623, ΔA624, M625M
Gene Name(s): CDC4 YFL009W
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
GLL(TPO)PPQSG E, F 9 synthetic

Small Molecules
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET
TPO
Query on TPO
E, F L-PEPTIDE LINKING C4 H10 N O6 P THR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.239
  • Space Group: P 32

Unit Cell:

Length (Å) Angle (°)
a = 107.67 α = 90.00
b = 107.67 β = 90.00
c = 168.30 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-12-12
  • Released Date: 2003-02-18
  • Deposition author(s): Orlicky, S., Tang, X., Willems, A., Tyers, M., Sicheri, F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4