Biological Assembly 1

Protein Symmetry: Asymmetric (View in 3D)

Protein Stoichiometry: Monomer

Biological Assembly 2

Protein Symmetry: C1 (View in 3D)

Protein Stoichiometry: A

Biological Assembly 3

Protein Symmetry: C1 (View in 3D)

Protein Stoichiometry: A

Macromolecule Content

• Unique protein chains: 1

1NDR

CRYSTALLOGRAPHIC STRUCTURE OF A BLUE COPPER NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS

• DOI: 10.2210/pdb1ndr/pdb

• Classification: REDUCTASE
• Deposited: 1997-01-23 Released: 1997-07-07
• Deposition author(s): Dodd, F.E., Hasnain, S.S., Abraham, Z.H.L., Eady, R.R., Smith, B.E.
• Organism: Achromobacter xylosoxidans
• Mutation(s): 39

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.0 Å
• R-Value Free: 0.270
• R-Value Work: 0.203

wwPDB Validation 3D Report Full Report

Literature

Macromolecules

Classification: REDUCTASE

Total Structure Weight: 103706.41

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions	3D Interactions
CU	A, B, C	COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N	Poseview Image of CU in 1NDR Help Black dashed lines indicate hydrogen bonds, salt bridges, and metal interactions. Green solid line show hydrophobic interactions and green dashed lines show π-π and π-cation interactions. Source Information Interactions are determined by geometric criteria as described in K. Stierand, M. Rarey (2010), Drawing the PDB: Protein-ligand complexes in two dimensions, ACS Med. Chem. Lett., DOI: 10.1021/ml100164p. Ions and some metal complexes are excluded, as well as cases where no interaction profile could be generated. Poseview diagrams can be calculated for approximately 92% of the remaining complexes in the PDB. PoseView is developed at the Center for Bioinformatics Hamburg and jointly provided with BioSolveIT as a community service at the PDB. A stand-alone version is provided by BioSolveIT.	Ligand Explorer NGL   Binding Pocket (JSmol)   Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.0 Å
• R-Value Free: 0.270
• R-Value Work: 0.203
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length (Å)	Angle (°)
a = 67.15	α = 90.00
b = 101.72	β = 90.00
c = 150.38	γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots

Entry History

Deposition Data

• Deposited Date: 1997-01-23
• Released Date: 1997-07-07
• Deposition author(s): Dodd, F.E., Hasnain, S.S., Abraham, Z.H.L., Eady, R.R., Smith, B.E.

Revision History

• Version 1_0: 1997-07-07
  

  Type: Initial release

• Version 1_1: 2008-03-24
  

  Type: Version format compliance

• Version 1_2: 2011-07-13
  

  Type: Version format compliance