Macromolecules
Sequence Display for 1ND0

Classification: IMMUNE SYSTEM

Total Structure Weight: 193525.69

Macromolecule Entities
Molecule Chains Length Organism Details
IMMUNOGLOBULIN IGG2A A, C, E, G 219 Mus musculus Fragment: IMMUNOGLOBULIN FAB FRAGMENT, light chain
Gene Name(s): Igk
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
IMMUNOGLOBULIN IGG2A B, D, F, H 222 Mus musculus Fragment: IMMUNOGLOBULIN FAB FRAGMENT, heavy chain
Gene Name(s): Igh-1a
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: ALPHA-HELICAL

Subgroup Name: Channels: Potassium, Sodium, & Proton Ion-Selective

Protein Name: KvAP Voltage-gated potassium Channel in complex with Fab


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DP4
Query on DP4

A, C, E, G (1s,4s)-4-[dimethyl(phenyl)silyl]-1-methylpiperidine 1- oxide
C14 H23 N O Si
HDJXTRKZEHHECC-GASCZTMLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

B, D, F, H SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.286
  • R-Value Work: 0.242
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 36.57 α = 75.51
b = 95.16 β = 88.64
c = 141.06 γ = 89.28

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-12-05
  • Released Date: 2003-05-13
  • Deposition author(s): Zhu, X., Wilson, I.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values