1NBB

N-BUTYLISOCYANIDE BOUND RHODOBACTER CAPSULATUS CYTOCHROME C'

Structural Biology Knowledgebase: 1NBB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Observed: 0.174

Literature

Macromolecules
Sequence Display for 1NBB

Classification: ELECTRON TRANSPORT (HEME PROTEIN)

Total Structure Weight: 27708.95

Macromolecule Entities
Molecule Chains Length Organism Details
CYTOCHROME C' A, B 129 Rhodobacter capsulatus Mutation: D90E
Details: N-BUTYLISOCYANIDE BOUND TO HEME IRON
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NBN
Query on NBN

A, B N-BUTYL ISOCYANIDE
C5 H9 N
FSBLVBBRXSCOKU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Observed: 0.174
  • Space Group: I 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 47.73 α = 90.00
b = 70.54 β = 87.02
c = 89.65 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-03-18
  • Released Date: 1996-08-17
  • Deposition author(s): Tahirov, T.H., Misaki, S., Meyer, T.E., Cusanovich, M.A., Higuchi, Y., Yasuoka, N.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4