1N95

Aryl Tetrahydrophyridine Inhbitors of Farnesyltranferase: Glycine, Phenylalanine and Histidine Derivatives


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.358
  • R-Value Work: 0.337

Literature

Macromolecules
Sequence Display for 1N95

Classification: TRANSFERASE

Total Structure Weight: 83868.33

Macromolecule Entities
Molecule Chains Length Organism Details
Protein farnesyltransferase alpha subunit A 315 Rattus norvegicus EC#: 2.5.1.58 IUBMB 2.5.1.59 IUBMB
Fragment: residue 55-369
Mutation: I156T
Gene Name(s): Fnta
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Protein farnesyltransferase beta subunit B 402 Rattus norvegicus EC#: 2.5.1.58 IUBMB
Fragment: residue 22-423
Gene Name(s): Fntb
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FTH
Query on FTH

B 1-[2-(4-CYANO-BENZYLAMINO)-3-(3-METHYL-3H- IMIDAZOL-4-YL)-PROPIONYL]-5-NAPHTHALEN-1- YL-1,2,3,6-TETRAHYDRO-PYRIDINE-4-CARBONITRILE
C31 H28 N6 O
ADDOXKIOPBTSEG-PMERELPUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HFP
Query on HFP

B ALPHA-HYDROXYFARNESYLPHOSPHONIC ACID
C15 H33 O4 P
IJNCEETVCWDDQB-KFWWJZLASA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
FTH N/A in BindingDB
N/A in BindingMoad
IC50: 1.2 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.358
  • R-Value Work: 0.337
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 171.13 α = 90.00
b = 171.13 β = 90.00
c = 69.40 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-11-22
  • Released Date: 2003-01-07
  • Deposition author(s): Gwaltney II, S.L., O'Conner, S.J., Nelson, L.T., Sullivan, G.M., Imade, H., Wang, W., Hasvold, L., Li, Q., Cohen, J., Gu, W.Z.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4