1N8P

Crystal Structure of cystathionine gamma-lyase from yeast

Structural Biology Knowledgebase: 1N8P SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.346
  • R-Value Work: 0.253

Literature

Macromolecules
Sequence Display for 1N8P

Classification: LYASE

Total Structure Weight: 170829.28

Macromolecule Entities
Molecule Chains Length Organism Details
Cystathionine gamma-lyase A, B, C, D 393 Saccharomyces cerevisiae EC#: 4.4.1.1 IUBMB
Gene Name(s): CYS3 CYI1 STR1 YAL012W FUN35
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLP
Query on PLP

A, B, C, D PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.346
  • R-Value Work: 0.253
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 153.82 α = 90.00
b = 62.16 β = 105.42
c = 160.84 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-11-21
  • Released Date: 2002-12-04
  • Deposition author(s): Messerschmidt, A., Worbs, M., Steegborn, C., Wahl, M.C., Huber, R., Clausen, T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update