1N4H

Characterization of ligands for the orphan nuclear receptor RORbeta

Structural Biology Knowledgebase: 1N4H SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.217

Literature

Macromolecules
Sequence Display for 1N4H

Classification: HORMONE / GROWTH FACTOR

Total Structure Weight: 31670.03

Macromolecule Entities
Molecule Chains Length Organism Details
Nuclear Receptor ROR-beta A 259 Rattus norvegicus Fragment: Ligand-Binding Domain
Gene Name(s): Rorb Nr1f2 Rzrb
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Steroid Receptor Coactivator-1 B 15 Homo sapiens EC#: 2.3.1.48 IUBMB
Fragment: NR-2 box
Gene Name(s): NCOA1 Gene View BHLHE74 SRC1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
REA
Query on REA

A RETINOIC ACID
C20 H28 O2
SHGAZHPCJJPHSC-YCNIQYBTSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
REA N/A in BindingDB
Kd: 280 nM  BindingMOAD
Ki: 280 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.217
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 52.20 α = 90.00
b = 58.13 β = 90.00
c = 106.04 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-10-31
  • Released Date: 2003-09-23
  • Deposition author(s): Stehlin-Gaon, C., Willmann, D., Sanglier, S., Van Dorsselaer, A., Renaud, J.-P., Moras, D., Schuele, R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4