1N3N

Crystal structure of a mycobacterial hsp60 epitope with the murine class I MHC molecule H-2Db

Structural Biology Knowledgebase: 1N3N SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.307
  • R-Value Work: 0.246

Literature

Macromolecules
Sequence Display for 1N3N

Classification: IMMUNE SYSTEM

Total Structure Weight: 180671.72

Macromolecule Entities
Molecule Chains Length Organism Details
H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B ALPHA CHAIN A, C, E, G 280 Mus musculus Fragment: EXTRACELLULAR DOMAINS
Gene Name(s): H2-D1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
BETA-2-MICROGLOBULIN B, D, F, H 99 Mus musculus Gene Name(s): B2m
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
mycobacterial hsp60 decameric epitope I, J, K, L 10 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

E, G SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.307
  • R-Value Work: 0.246
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 129.28 α = 90.00
b = 123.00 β = 90.01
c = 150.83 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-10-29
  • Released Date: 2003-05-27
  • Deposition author(s): Ciatto, C., Capitani, G., Tissot, A.C., Pecorari, F., Pluckthun, A., Grutter, M.G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4