1N3L

Crystal structure of a human aminoacyl-tRNA synthetase cytokine

Structural Biology Knowledgebase: 1N3L SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.18 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.180

Literature

Macromolecules
Sequence Display for 1N3L

Classification: LIGASE

Total Structure Weight: 42702.41

Macromolecule Entities
Molecule Chains Length Organism Details
tyrosyl-tRNA synthetase A 372 Homo sapiens EC#: 6.1.1.1 IUBMB
Fragment: mini TyrRS
Gene Name(s): YARS Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.18 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.180
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 74.60 α = 90.00
b = 162.39 β = 90.00
c = 35.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-10-28
  • Released Date: 2002-11-20
  • Deposition author(s): Yang, X.-L., Skene, R.J., McRee, D.E., Schimmel, P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values