1N21

(+)-Bornyl Diphosphate Synthase: Cocrystal with Mg and 3-aza-2,3-dihydrogeranyl diphosphate

Structural Biology Knowledgebase: 1N21 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.207

Literature

Macromolecules
Sequence Display for 1N21

Classification: isomerase

Total Structure Weight: 64423.51

Macromolecule Entities
Molecule Chains Length Organism Details
(+)-bornyl diphosphate synthase A 549 Salvia officinalis EC#: 5.5.1.8 IUBMB
Fragment: residue 50-598
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
3AG
Query on 3AG

A 2-[METHYL-(4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL- DIPHOSPHATE
3-AZA-2,3-DIHYDROGERANYL DIPHOSPHATE (Synonym)
C9 H18 N O7 P2
UWHNDWYDKGVRGE-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.207
  • Space Group: P 63 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 198.38 α = 90.00
b = 198.38 β = 90.00
c = 122.84 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-10-21
  • Released Date: 2002-11-27
  • Deposition author(s): Whittington, D.A., Wise, M.L., Urbansky, M., Coates, R.M., Croteau, R.B., Christianson, D.W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4