1N1D

Glycerol-3-phosphate cytidylyltransferase complexed with CDP-glycerol

Structural Biology Knowledgebase: 1N1D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.294
  • R-Value Work: 0.241

Literature

Macromolecules
Sequence Display for 1N1D

Classification: transferase

Total Structure Weight: 63379.96

Macromolecule Entities
Molecule Chains Length Organism Details
glycerol-3-phosphate cytidylyltransferase A, B, C, D 129 Bacillus subtilis EC#: 2.7.7.39 IUBMB
Gene Name(s): tagD BSU35740
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
C2G
Query on C2G

A, B, C, D [CYTIDINE-5'-PHOSPHATE] GLYCERYLPHOSPHORIC ACID ESTER
CYTIDINE 5'-DIPHOSPHOGLYCEROL (Synonym)
C12 H21 N3 O13 P2
HHPOUCCVONEPRK-CNYIRLTGSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.294
  • R-Value Work: 0.241
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 37.79 α = 88.99
b = 55.93 β = 75.03
c = 63.70 γ = 82.54

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-10-17
  • Released Date: 2003-11-11
  • Deposition author(s): Pattridge, K.A., Weber, C.H., Friesen, J.A., Sankar, S., Kent, C., Ludwig, M.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4