1N0I

Crystal Structure of Ferrochelatase with Cadmium bound at active site

Structural Biology Knowledgebase: 1N0I SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.231

Literature

Macromolecules
Sequence Display for 1N0I

Classification: LYASE

Total Structure Weight: 35758.71

Macromolecule Entities
Molecule Chains Length Organism Details
Ferrochelatase A 310 Bacillus subtilis EC#: 4.99.1.1 IUBMB
Gene Name(s): hemH hemF BSU10130
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CD
Query on CD

A CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.231
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 48.42 α = 90.00
b = 49.88 β = 90.00
c = 118.78 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-10-14
  • Released Date: 2003-05-27
  • Deposition author(s): Lecerof, D., Fodje, M.N., Leon, R.A., Olsson, U., Hansson, A., Sigfridsson, E., Ryde, U., Hansson, M., Al-Karadaghi, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4