1N08

Crystal Structure of Schizosaccharomyces pombe Riboflavin Kinase Reveals a Novel ATP and Riboflavin Binding Fold

Structural Biology Knowledgebase: 1N08 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.220

Literature

Macromolecules
Sequence Display for 1N08

Classification: TRANSFERASE

Total Structure Weight: 38862.96

Macromolecule Entities
Molecule Chains Length Organism Details
putative riboflavin kinase A, B 163 Schizosaccharomyces pombe EC#: 2.7.1.26 IUBMB
Gene Name(s): fmn1 SPCC18.16c
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.220
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 41.24 α = 89.70
b = 45.32 β = 112.04
c = 52.85 γ = 98.41

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-10-11
  • Released Date: 2003-02-25
  • Deposition author(s): Bauer, S., Kemter, K., Bacher, A., Huber, R., Fischer, M., Steinbacher, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4