1N07

Crystal Structure of Schizosaccharomyces pombe Riboflavin Kinase Reveals a Novel ATP and Riboflavin Binding Fold


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.228

Literature

Macromolecules
Sequence Display for 1N07

Classification: TRANSFERASE

Total Structure Weight: 39644.59

Macromolecule Entities
Molecule Chains Length Organism Details
PUTATIVE riboflavin kinase A, B 163 Schizosaccharomyces pombe EC#: 2.7.1.26 IUBMB
Gene Name(s): fmn1 SPCC18.16c
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMN
Query on FMN

A, B FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE (Synonym)
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ADP
Query on ADP

A, B ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.228
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 38.81 α = 90.69
b = 45.77 β = 111.03
c = 51.90 γ = 97.31

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-10-11
  • Released Date: 2003-02-25
  • Deposition author(s): Bauer, S., Kemter, K., Bacher, A., Huber, R., Fischer, M., Steinbacher, S.

Revision History

  • Version 1_0: 2003-02-25

    Type: Initial release

  • Version 1_1: 2008-04-28

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance