1MZR

Structure of dkga from E.coli at 2.13 A resolution solved by molecular replacement


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.13 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.175

Literature

Macromolecules
Sequence Display for 1MZR

Classification: OXIDOREDUCTASE

Total Structure Weight: 68031.84

Macromolecule Entities
Molecule Chains Length Organism Details
2,5-diketo-D-gluconate reductase A A, B 296 Escherichia coli EC#: 1.1.1 IUBMB
Gene Name(s): dkgA yqhE b3012 JW5499
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A, B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.13 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.175
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 139.18 α = 90.00
b = 145.70 β = 90.00
c = 79.51 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-10-09
  • Released Date: 2003-10-28
  • Deposition author(s): Abergel, C., Jeudy, S., Monchois, V., Claverie, J.M., Bacterial targets at IGS-CNRS, France (BIGS)

Revision History

  • 2008-04-28
    Type: Version format compliance
  • 2011-07-13
    Type: Non-polymer description, Version format compliance