1MZO

Crystal structure of pyruvate formate-lyase with pyruvate

Structural Biology Knowledgebase: 1MZO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.196

Literature

Macromolecules
Sequence Display for 1MZO

Classification: TRANSFERASE

Total Structure Weight: 170983.44

Macromolecule Entities
Molecule Chains Length Organism Details
Pyruvate formate-lyase A, B 759 Escherichia coli EC#: 2.3.1.54 IUBMB
Gene Name(s): pflB pfl b0903 JW0886
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PGE
Query on PGE

A TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PYR
Query on PYR

A, B PYRUVIC ACID
C3 H4 O3
LCTONWCANYUPML-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.196
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 158.35 α = 90.00
b = 158.35 β = 90.00
c = 159.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-10-09
  • Released Date: 2002-12-11
  • Deposition author(s): Lehtio, L., Leppanen, V.-M., Kozarich, J.W., Goldman, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4