1MYP

X-RAY CRYSTAL STRUCTURE OF CANINE MYELOPEROXIDASE AT 3 ANGSTROMS RESOLUTION

Structural Biology Knowledgebase: 1MYP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Observed: 0.257

Literature

Macromolecules
Sequence Display for 1MYP

Classification: MYELOPEROXIDASE

Total Structure Weight: 134960.86

Macromolecule Entities
Molecule Chains Length Organism Details
MYELOPEROXIDASE A, B 108 Canis lupus EC#: 1.11.2.2 IUBMB
Gene Name(s): MPO Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
MYELOPEROXIDASE C, D 466 Canis lupus EC#: 1.11.2.2 IUBMB
Gene Name(s): MPO Gene View

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Observed: 0.257
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 133.00 α = 90.00
b = 133.00 β = 90.00
c = 203.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1992-04-15
  • Released Date: 1994-01-31
  • Deposition author(s): Fenna, R.E., Zeng, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update