1MWA

2C/H-2KBM3/DEV8 ALLOGENEIC COMPLEX

Structural Biology Knowledgebase: 1MWA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.313
  • R-Value Work: 0.284

Literature

Macromolecules
Sequence Display for 1MWA

Classification: IMMUNE SYSTEM

Total Structure Weight: 189345.52

Macromolecule Entities
Molecule Chains Length Organism Details
2C T CELL RECEPTOR ALPHA CHAIN A, C 202 Mus musculus Mutation: Q127A, K165A
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
2C T CELL RECEPTOR BETA CHAIN B, D 237 Mus musculus Mutation: Q97G, ΔR127, ΔA128, E105T, Q106L, F107Y, P110A, T115S
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
H-2KBM3 MHC CLASS I MOLECULE HEAVY CHAIN H, I 275 Mus musculus Mutation: D77S, K89A, E275R
Gene Name(s): H2-K1 H2-K
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
MICROGLOBULIN MHC LIGHT CHAIN L, M 99 Mus musculus Gene Name(s): B2m
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DEV8 P, Q 8 Mus musculus Fragment: residues 54-61
Details: derived from NADH-UBIQUINONE OXIDOREDUCTASE MLRQ SUBUNIT
Gene Name(s): Ndufa4
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B, C, H N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A, B, C BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, I, L GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACY
Query on ACY

P ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.313
  • R-Value Work: 0.284
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 297.90 α = 90.00
b = 95.94 β = 90.00
c = 84.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-09-27
  • Released Date: 2002-11-27
  • Deposition author(s): Luz, J.G., Huang, M.D., Garcia, K.C., Rudolph, M.G., Teyton, L., Wilson, I.A.
  • Previous versions: 1JTR

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update