1MVX

structure of the SET domain histone lysine methyltransferase Clr4


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.286
  • R-Value Work: 0.216

Literature

Macromolecules
Sequence Display for 1MVX

Classification: TRANSFERASE

Total Structure Weight: 34274.88

Macromolecule Entities
Molecule Chains Length Organism Details
CRYPTIC LOCI REGULATOR 4 A 299 Schizosaccharomyces pombe EC#: 2.1.1.43 IUBMB
Fragment: Residues 192-490
Gene Name(s): clr4 kmt1 SPBC428.08c
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NI
Query on NI

A NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.286
  • R-Value Work: 0.216
  • Space Group: P 61 2 2

Unit Cell:

Length (Å) Angle (°)
a = 75.46 α = 90.00
b = 75.46 β = 90.00
c = 189.13 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-09-26
  • Released Date: 2002-10-30
  • Deposition author(s): Min, J.R., Zhang, X., Cheng, X.D., Grewal, S.I.S., Xu, R.-M.

Revision History

  • 2008-04-28
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance