1MU9

Crystal Structure of a Human Tyrosyl-DNA Phosphodiesterase (Tdp1)-Vanadate Complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 1MU9

Classification: HYDROLASE

Total Structure Weight: 109876.45

Macromolecule Entities
Molecule Chains Length Organism Details
Tyrosyl-DNA Phosphodiesterase A, B 485 Homo sapiens EC#: 3.1.4 IUBMB
Fragment: RESIDUES 149-608
Mutation: D322N, M328T, F548L
Gene Name(s): TDP1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
VO4
Query on VO4

A, B VANADATE ION
O4 V
LSGOVYNHVSXFFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.199
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 50.03 α = 90.00
b = 104.98 β = 90.00
c = 194.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-09-23
  • Released Date: 2003-01-07
  • Deposition author(s): Davies, D.R., Interthal, H., Champoux, J.J., Hol, W.G.J.

Revision History

  • 2008-04-28
    Type: Version format compliance
  • 2011-07-13
    Type: Non-polymer description, Version format compliance