1MT6

Structure of histone H3 K4-specific methyltransferase SET7/9 with AdoHcy

Structural Biology Knowledgebase: 1MT6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.226

Literature

Macromolecules
Sequence Display for 1MT6

Classification: TRANSFERASE

Total Structure Weight: 31535.05

Macromolecule Entities
Molecule Chains Length Organism Details
SET9 A 280 Homo sapiens EC#: 2.1.1.43 IUBMB
Gene Name(s): SETD7 Gene View KIAA1717 KMT7 SET7 SET9
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SAH
Query on SAH

A S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
SAH IC50: 30000 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.226
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 70.35 α = 90.00
b = 76.04 β = 90.00
c = 166.28 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-09-20
  • Released Date: 2002-11-06
  • Deposition author(s): Jacobs, S.A., Harp, J.M., Devarakonda, S., Kim, Y., Rastinejad, F., Khorasanizadeh, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4