1MNC

STRUCTURE OF HUMAN NEUTROPHIL COLLAGENASE REVEALS LARGE S1' SPECIFICITY POCKET

Structural Biology Knowledgebase: 1MNC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Observed: 0.176

Literature

Macromolecules
Sequence Display for 1MNC

Classification: HYDROLASE (METALLOPROTEASE)

Total Structure Weight: 18399.90

Macromolecule Entities
Molecule Chains Length Organism Details
NEUTROPHIL COLLAGENASE A 163 Homo sapiens EC#: 3.4.24.34 IUBMB
Mutation: N106G, R151G, N171G
Gene Name(s): MMP8 Gene View CLG1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLH
Query on PLH

A METHYLAMINO-PHENYLALANYL-LEUCYL-HYDROXAMIC ACID
C18 H27 N3 O4
MOPRTFSMCQNUCT-CABCVRRESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
PLH IC50: 0.046 nM (98) BindingDB
Ki: <1 - 2 nM (98) BindingDB

N/A in BindingMoad
IC50: 0.046 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Observed: 0.176
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 34.92 α = 90.00
b = 61.28 β = 90.00
c = 68.25 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1994-01-12
  • Released Date: 1995-02-07
  • Deposition author(s): Stams, T., Spurlino, J.C., Smith, D.L., Rubin, B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4