1MLZ

Crystal Structure of 7,8-Diaminopelargonic Acid Synthase in complex with the trans-isomer of amiclenomycin.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 1MLZ

Classification: TRANSFERASE

Total Structure Weight: 95553.54

Macromolecule Entities
Molecule Chains Length Organism Details
7,8-diamino-pelargonic acid aminotransferase A, B 429 Escherichia coli EC#: 2.6.1.62 IUBMB
Mutation: W14L
Gene Name(s): bioA b0774 JW0757
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLP
Query on PLP

A, B PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TZA
Query on TZA

A, B TRANS-AMICLENOMYCIN
5-DIENYL)- BUTYRIC ACID, (Synonym)
C10 H16 N2 O2
LAJWZJCOWPUSOA-CIUDSAMLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.205
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 128.03 α = 90.00
b = 55.96 β = 109.65
c = 116.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-09-02
  • Released Date: 2002-12-04
  • Deposition author(s): Sandmark, J., Mann, S., Marquet, A., Schneider, G.

Revision History

  • Version 1_0: 2002-12-04

    Type: Initial release

  • Version 1_1: 2008-04-28

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Non-polymer description, Version format compliance