1MLV

Structure and Catalytic Mechanism of a SET Domain Protein Methyltransferase

Structural Biology Knowledgebase: 1MLV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.232

Literature

Macromolecules
Sequence Display for 1MLV

Classification: TRANSFERASE

Total Structure Weight: 153757.41

Macromolecule Entities
Molecule Chains Length Organism Details
Ribulose-1,5 biphosphate carboxylase/oxygenase large subunit N-methyltransferase A, B, C 444 Pisum sativum EC#: 2.1.1.127 IUBMB
Fragment: Residues 46-482
Gene Name(s): RBCMT
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SAH
Query on SAH

A, B, C S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EPE
Query on EPE

A, B, C 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES (Synonym)
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.232
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 132.16 α = 90.00
b = 156.68 β = 90.00
c = 268.44 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-08-30
  • Released Date: 2002-10-30
  • Deposition author(s): Trievel, R.C., Beach, B.M., Dirk, L.M.A., Houtz, R.L., Hurley, J.H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values