1ML2

Crystal Structure of a Mutant Variant of Cytochrome c Peroxidase with Zn(II)-(20-oxo-Protoporphyrin IX)

Structural Biology Knowledgebase: 1ML2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.183

Literature

Macromolecules
Sequence Display for 1ML2

Classification: OXIDOREDUCTASE

Total Structure Weight: 34238.61

Macromolecule Entities
Molecule Chains Length Organism Details
Cytochrome c Peroxidase A 294 Saccharomyces cerevisiae EC#: 1.11.1.5 IUBMB
Mutation: H52Y
Gene Name(s): CCP1 CCP CPO Gene View YKR066C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZEM
Query on ZEM

A 20-OXO-PROTOPORPHYRIN IX CONTAINING ZN(II)
ZN(II)-(20-OXO-PROTOPORPHYRIN IX) (Synonym)
C34 H32 N4 O5 Zn
GKGQUBKNYNPVCL-ZALNKZPHDI
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.183
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 50.49 α = 90.00
b = 51.00 β = 90.00
c = 118.76 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-08-29
  • Released Date: 2003-04-08
  • Deposition author(s): Bhaskar, B., Immoos, C.E., Shimizu, H., Farmer, P.J., Poulos, T.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4