1MKP

CRYSTAL STRUCTURE OF PYST1 (MKP3)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.201

Literature

Macromolecules
Sequence Display for 1MKP

Classification: HYDROLASE

Total Structure Weight: 16428.41

Macromolecule Entities
Molecule Chains Length Organism Details
PYST1 A 144 Homo sapiens EC#: 3.1.3.16 IUBMB 3.1.3.48 IUBMB
Fragment: CATALYTIC DOMAIN
Mutation: C293S
Details: MPD AND CHLORIDE ION
Gene Name(s): DUSP6 Gene View MKP3 PYST1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

A (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.201
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 90.00 α = 90.00
b = 90.00 β = 90.00
c = 68.41 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-07-11
  • Released Date: 1999-07-22
  • Deposition author(s): Stewart, A.E., Dowd, S., Keyse, S., Mcdonald, N.Q.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4