1MJ7

Crystal Structure Of The Complex Of The Fab fragment of Esterolytic Antibody MS5-393 and A Transition-State Analog

Structural Biology Knowledgebase: 1MJ7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.303
  • R-Value Work: 0.200

Literature

Macromolecules
Sequence Display for 1MJ7

Classification: IMMUNE SYSTEM

Total Structure Weight: 49215.18

Macromolecule Entities
Molecule Chains Length Organism Details
IMMUNOGLOBULIN MS5-393 L 219 Mus musculus Fragment: Fab fragment, LIGHT CHAIN
IMMUNOGLOBULIN MS5-393 H 228 Mus musculus Fragment: Fab fragment, HEAVY CHAIN

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HAL
Query on HAL

H N-{[2-({[1-(4-CARBOXYBUTANOYL)AMINO]-2-PHENYLETHYL}- HYDROXYPHOSPHINYL)OXY]ACETYL}-2-PHENYLETHYLAMINE
C23 H29 N2 O7 P
DKQZZKSBRCTCQU-QFIPXVFZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
HAL N/A in BindingDB
Kd: 4.5 nM  BindingMOAD
Kd: 4.50 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.303
  • R-Value Work: 0.200
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 128.24 α = 90.00
b = 40.53 β = 109.72
c = 85.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-08-27
  • Released Date: 2003-09-23
  • Deposition author(s): Ruzheinikov, S.N., Muranova, T.A., Sedelnikova, S.E., Partridge, L.J., Blackburn, G.M., Murray, I.A., Kakinuma, H., Takashi, N., Shimazaki, K., Sun, J., Nishi, Y., Rice, D.W.

Revision History

  • 2011-11-16
    Type: Atom occupancy | Details: Atom occupancy
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4