1MHC

MODEL OF MHC CLASS I H2-M3 WITH NONAPEPTIDE FROM RAT ND1 REFINED AT 2.3 ANGSTROMS RESOLUTION

Structural Biology Knowledgebase: 1MHC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Observed: 0.190

Literature

Macromolecules
Sequence Display for 1MHC

Classification: HISTOCOMPATIBILITY ANTIGEN / PEPTIDE

Total Structure Weight: 91242.79

Macromolecule Entities
Molecule Chains Length Organism Details
MHC CLASS I ANTIGEN H2-M3 A, D 282 Mus musculus Mutation: ΔG299
Gene Name(s): H2-M3 H-2M3 mCG_23393
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
MHC CLASS I ANTIGEN H2-M3 B, E 99 Mus musculus Gene Name(s): B2m
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
NONAPEPTIDE FROM RAT NADH DEHYDROGENASE C, F 9 Rattus rattus Gene Name(s): Mtnd1 mt-Nd1 Nd1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

D N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
FME
Query on FME
C, F L-PEPTIDE LINKING C6 H11 N O3 S MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Observed: 0.190
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 65.25 α = 102.71
b = 66.10 β = 96.28
c = 55.17 γ = 110.19

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-08-23
  • Released Date: 1996-01-29
  • Deposition author(s): Wang, C.-R., Fischer Lindahl, K., Deisenhofer, J.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4