1MH9

Crystal Structure Analysis of deoxyribonucleotidase

Structural Biology Knowledgebase: 1MH9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.159

Literature

Macromolecules
Sequence Display for 1MH9

Classification: Hydrolase

Total Structure Weight: 22960.57

Macromolecule Entities
Molecule Chains Length Organism Details
deoxyribonucleotidase A 197 Homo sapiens Gene Name(s): NT5M Gene View DNT2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.159
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 73.96 α = 90.00
b = 73.96 β = 90.00
c = 105.93 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-08-19
  • Released Date: 2002-10-30
  • Deposition author(s): Rinaldo-Matthis, A., Rampazzo, C., Reichard, P., Bianchi, V., Nordlund, P.

Revision History

  • 2014-11-12
    Type: Function and keywords | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4