1MH0

Crystal structure of the anticoagulant slow form of thrombin

Structural Biology Knowledgebase: 1MH0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 1MH0

Classification: BLOOD CLOTTING

Total Structure Weight: 66458.66

Macromolecule Entities
Molecule Chains Length Organism Details
Prothrombin A, B 287 Homo sapiens EC#: 3.4.21.5 IUBMB
Mutation: R77AA
Gene Name(s): F2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.219
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 60.53 α = 90.00
b = 72.89 β = 90.00
c = 161.49 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-08-18
  • Released Date: 2002-11-08
  • Deposition author(s): Pineda, A.O., Savvides, S., Waksman, G., Di Cera, E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update