1MFZ

Partially refined 2.8 A Crystal structure of GDP-mannose dehydrogenase from P. aeruginosa

Structural Biology Knowledgebase: 1MFZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.204

Literature

Macromolecules
Sequence Display for 1MFZ

Classification: OXIDOREDUCTASE

Total Structure Weight: 194793.34

Macromolecule Entities
Molecule Chains Length Organism Details
GDP-mannose 6-dehydrogenase A, B, C, D 436 Pseudomonas aeruginosa EC#: 1.1.1.132 IUBMB
Mutation: M1M, M173M, M208M, M242M, M258M, M289M, M294M, M341M, M423M
Gene Name(s): algD PA3540
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GDX
Query on GDX

B, D GUANOSINE 5'-(TRIHYDROGEN DIPHOSPHATE), P'- D-MANNOPYRANOSYL ESTER
C16 H23 N5 O17 P2
DNBSDUDYNPJVCN-ZXTXFPBHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.204
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 131.17 α = 90.00
b = 136.83 β = 90.00
c = 218.56 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-08-14
  • Released Date: 2003-05-06
  • Deposition author(s): Snook, C.F., Tipton, P.A., Beamer, L.J.

Revision History

  • 2014-11-12
    Type: Function and keywords | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4