1MFP

E. coli Enoyl Reductase in complex with NAD and SB611113

Structural Biology Knowledgebase: 1MFP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.33 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 1MFP

Classification: OXIDOREDUCTASE

Total Structure Weight: 57957.95

Macromolecule Entities
Molecule Chains Length Organism Details
enoyl-[acyl-carrier-protein] reductase [Nadh] A, B 262 Escherichia coli EC#: 1.3.1.9 IUBMB
Gene Name(s): fabI envM b1288 JW1281
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A, B NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IDN
Query on IDN

A, B (E)-N-METHYL-N-(1-METHYL-1H-INDOL-3-YLMETHYL)- 3-(7-OXO-5,6,7,8-TETRAHYDRO-[1,8]NAPHTHYRIDIN- 3-YL)-ACRYLAMIDE
INDOLE NAPHTHYRIDINONE (Synonym)
C22 H22 N4 O2
VAZMNDXVXVUKFY-JXMROGBWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
IDN IC50: 70 nM (100) BindingDB

IC50: 70 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.33 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.198
  • Space Group: P 61 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 79.60 α = 90.00
b = 79.60 β = 90.00
c = 325.48 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-08-13
  • Released Date: 2003-05-06
  • Deposition author(s): Seefeld, M.A., Miller, W.H., Newlander, K.A., Burgess, W.J., DeWolf Jr., W.E., Elkins, P.A., Head, M.S., Jakas, D.R., Janson, C.A., Keller, P.M., Manley, P.J., Moore, T.D., Payne, D.J., Pearson, S., Polizzi, B.J., Qiu, X., Rittenhouse, S.F., Uzinskas, I.N., Wallis, N.G., Huffman, W.F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values