1MBZ

BETA-LACTAM SYNTHETASE WITH TRAPPED INTERMEDIATE

Structural Biology Knowledgebase: 1MBZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.47 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.214

Literature

Macromolecules
Sequence Display for 1MBZ

Classification: HYDROLASE

Total Structure Weight: 110960.67

Macromolecule Entities
Molecule Chains Length Organism Details
BETA-LACTAM SYNTHETASE A, B 513 Streptomyces clavuligerus EC#: 6.3.3.4 IUBMB
Gene Name(s): bls
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IOT
Query on IOT

A, B ARGININE-N-METHYLCARBONYL PHOSPHORIC ACID 5'- ADENOSINE ESTER
C18 H28 N9 O10 P
PLEMKERVZBXYMR-CWPZRQPOSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
POP
Query on POP

A, B PYROPHOSPHATE 2-
H2 O7 P2
XPPKVPWEQAFLFU-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.47 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.214
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 61.39 α = 90.00
b = 97.15 β = 90.11
c = 81.09 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-08-04
  • Released Date: 2002-10-23
  • Deposition author(s): Miller, M.T., Bachmann, B.O., Townsend, C.A., Rosenzweig, A.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update