1MBU

Crystal Structure Analysis of ClpSN heterodimer

Structural Biology Knowledgebase: 1MBU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.217

Literature

Macromolecules
Sequence Display for 1MBU

Classification: PROTEIN BINDING

Total Structure Weight: 57920.39

Macromolecule Entities
Molecule Chains Length Organism Details
ATP-Dependent clp Protease ATP-Binding Subunit clp A A, B 142 Escherichia coli Gene Name(s): clpA lopD b0882 JW0866
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Protein yljA C, D 106 Escherichia coli Gene Name(s): clpS yljA b0881 JW0865
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
YBT
Query on YBT

A, B, D BIS-(2-HYDROXYETHYL)AMINO-TRIS(HYDROXYMETHYL)METHANE YTTRIUM
C8 H19 N O5 Y
KSJVCBJVYSTBHB-UXIAQZODAR
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.217
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 87.91 α = 90.00
b = 87.91 β = 90.00
c = 209.42 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-08-03
  • Released Date: 2002-12-11
  • Deposition author(s): Guo, F., Esser, L., Singh, S.K., Maurizi, M.R., Xia, D.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4