1MBD

X-ray structure of sperm whale deoxymoglobin refined at 1.4A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Work:

Literature

Macromolecules
Sequence Display for 1MBD

Classification: OXYGEN STORAGE

Total Structure Weight: 17947.50

Macromolecule Entities
Molecule Chains Length Organism Details
MYOGLOBIN A 153 Physeter catodon Gene Name(s): MB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Observed:
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 64.66 α = 90.00
b = 31.12 β = 105.78
c = 35.06 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1981-08-27
  • Released Date: 1982-02-03
  • Deposition author(s): Phillips, S.E.V.

Revision History

  • Version 1_0: 1982-02-03

    Type: Initial release

  • Version 1_1: 2008-03-03

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-11-08

    Type: Database references, Other, Structure summary