1MAI

STRUCTURE OF THE PLECKSTRIN HOMOLOGY DOMAIN FROM PHOSPHOLIPASE C DELTA IN COMPLEX WITH INOSITOL TRISPHOSPHATE

Structural Biology Knowledgebase: 1MAI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 1MAI

Classification: SIGNAL TRANSDUCTION PROTEIN

Total Structure Weight: 15865.81

Macromolecule Entities
Molecule Chains Length Organism Details
PHOSPHOLIPASE C DELTA-1 A 131 Rattus norvegicus EC#: 3.1.4.11 IUBMB
Fragment: PLECKSTRIN HOMOLOGY DOMAIN
Details: COMPLEXED WITH D-MYO-INOSITOL-1,4,5-TRISPHOSPHATE
Gene Name(s): Plcd1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
I3P
Query on I3P

A D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE
C6 H15 O15 P3
MMWCIQZXVOZEGG-XJTPDSDZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
I3P N/A in BindingDB
Kd: 210 nM  BindingMOAD
Kd: 210 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.291
  • R-Value Work: 0.205
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 59.40 α = 90.00
b = 59.40 β = 90.00
c = 80.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-05-23
  • Released Date: 1996-11-08
  • Deposition author(s): Ferguson, K.M., Lemmon, M.A., Schlessinger, J., Sigler, P.B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4