1M6P

EXTRACYTOPLASMIC DOMAIN OF BOVINE CATION-DEPENDENT MANNOSE 6-PHOSPHATE RECEPTOR


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.224

Literature

Macromolecules
Sequence Display for 1M6P

Classification: RECEPTOR

Total Structure Weight: 35056.88

Macromolecule Entities
Molecule Chains Length Organism Details
CATION-DEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR A, B 152 Bos taurus Fragment: EXTRACYTOPLASMIC DOMAIN
Mutation: N31Q, N57Q, N68Q, N87Q
Gene Name(s): M6PR Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
M6P
Query on M6P

A, B ALPHA-D-MANNOSE-6-PHOSPHATE
C6 H13 O9 P
NBSCHQHZLSJFNQ-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
M6P IC50: 23000 nM (90) BindingDB

Kd: 8000 nM  BindingMOAD
Kd: 8000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.224
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 92.64 α = 90.00
b = 92.64 β = 90.00
c = 85.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-04-19
  • Released Date: 1999-04-27
  • Deposition author(s): Roberts, D.L., Weix, D.J., Dahms, N.M., Kim, J.J.-P.

Revision History

  • Version 1_0: 1999-04-27

    Type: Initial release

  • Version 1_1: 2008-03-24

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance