1M6D

Crystal structure of human cathepsin F

Structural Biology Knowledgebase: 1M6D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 1M6D

Classification: HYDROLASE

Total Structure Weight: 48481.10

Macromolecule Entities
Molecule Chains Length Organism Details
Cathepsin F A, B 214 Homo sapiens EC#: 3.4.22.41 IUBMB
Mutation: N96Q, N108Q, N167AQ
Gene Name(s): CTSF Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MYP
Query on MYP

A, B 4-MORPHOLIN-4-YL-PIPERIDINE-1-CARBOXYLIC ACID [1- (3-BENZENESULFONYL-1-PROPYL-ALLYLCARBAMOYL)- 2-PHENYLETHYL]-AMIDE
C31 H42 N4 O5 S
OFBHNKJTHNHXQT-WNJJXGMVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.195
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 68.25 α = 90.00
b = 103.26 β = 90.00
c = 58.65 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-07-15
  • Released Date: 2003-07-15
  • Deposition author(s): Somoza, J.R., Palmer, J.T., Ho, J.D.

Revision History

  • 2013-07-17
    Type: Non-polymer description | Details: fixed errors in ligands MYP A 1280 and MYP A 1283, which should be a single MYP
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4