1M55

Catalytic domain of the Adeno Associated Virus type 5 Rep protein

Structural Biology Knowledgebase: 1M55 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.196
  • R-Value Work: 0.178

Literature

Macromolecules
Sequence Display for 1M55

Classification: Viral protein

Total Structure Weight: 46017.56

Macromolecule Entities
Molecule Chains Length Organism Details
Rep protein A, B 197 Adeno-associated dependoparvovirus b Fragment: Catalytic domain (Residues 1-197)
Gene Name(s): rep Rep22
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.196
  • R-Value Work: 0.178
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 42.89 α = 90.00
b = 73.46 β = 94.49
c = 65.56 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-07-08
  • Released Date: 2002-08-28
  • Deposition author(s): Hickman, A.B., Ronning, D.R., Kotin, R.M., Dyda, F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4