1M52

Crystal Structure of the c-Abl Kinase domain in complex with PD173955


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.211

Literature

Macromolecules
Sequence Display for 1M52

Classification: TRANSFERASE

Total Structure Weight: 68764.22

Macromolecule Entities
Molecule Chains Length Organism Details
PROTO-ONCOGENE TYROSINE-PROTEIN KINASE ABL1 A, B 293 Mus musculus EC#: 2.7.10.2 IUBMB
Fragment: Kinase Domain (residues 232-503)
Gene Name(s): Abl1 Abl
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
P17
Query on P17

A, B 6-(2,6-DICHLORO-PHENYL)-8-METHYL-2-(3-METHYLSULFANYL- PHENYLAMINO)-8H-PYRIDO[2,3-D]PYRIMIDIN-7- ONE
PD173955 (Synonym)
C21 H16 Cl2 N4 O S
VAARYSWULJUGST-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MES
Query on MES

B 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
P17 EC50: <3 nM (99) BindingDB
IC50: 23 - 28 nM (99) BindingDB
Kd: 0.52 - 2100 nM (91 - 99) BindingDB
Ki: 0.2 nM (99) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.211
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 115.85 α = 90.00
b = 125.71 β = 90.00
c = 56.72 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-07-08
  • Released Date: 2002-09-18
  • Deposition author(s): Nagar, B., Bornmann, W., Pellicena, P., Schindler, T., Veach, D., Miller, W.T., Clarkson, B., Kuriyan, J.

Revision History

  • Version 1_0: 2002-09-18

    Type: Initial release

  • Version 1_1: 2008-04-28

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance