1M4U

Crystal structure of Bone Morphogenetic Protein-7 (BMP-7) in complex with the secreted antagonist Noggin

Structural Biology Knowledgebase: 1M4U SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.42 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.241

Literature

Macromolecules
Sequence Display for 1M4U

Classification: HORMONE / GROWTH FACTOR

Total Structure Weight: 39337.24

Macromolecule Entities
Molecule Chains Length Organism Details
Bone Morphogenetic Protein-7 L 139 Homo sapiens Gene Name(s): BMP7 Gene View OP1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Noggin A 206 Homo sapiens Gene Name(s): NOG Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

L N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.42 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.241
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 99.83 α = 90.00
b = 99.83 β = 90.00
c = 150.33 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-07-03
  • Released Date: 2002-12-18
  • Deposition author(s): Groppe, J., Greenwald, J., Wiater, E., Rodriguez-Leon, J., Economides, A.N., Kwiatkowski, W., Affolter, M., Vale, W.W., Izpisua-Belmonte, J.C., Choe, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values