1M4N

CRYSTAL STRUCTURE OF APPLE ACC SYNTHASE IN COMPLEX WITH [2-(AMINO-OXY)ETHYL](5'-DEOXYADENOSIN-5'-YL)(METHYL)SULFONIUM

Structural Biology Knowledgebase: 1M4N SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 1M4N

Classification: LYASE

Total Structure Weight: 49892.03

Macromolecule Entities
Molecule Chains Length Organism Details
1-aminocyclopropane-1-carboxylate synthase A 435 Malus domestica EC#: 4.4.1.14 IUBMB
Fragment: RESIDUES 1-435
Gene Name(s): ACS-1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AAD
Query on AAD

A (2-AMINOOXY-ETHYL)-[5-(6-AMINO-PURIN-9-YL)- 3,4-DIHYDROXY-TETRAHYDRO-FURAN-2-YLMETHYL]- METHYL-SULFONIUM
5'-[[2-(AMINOOXY)ETHYL]METHYLSULFONIO]-5'- DEOXY-ADENOSINE; [2-(AMINO-OXY)ETHYL](5'- DEOXYADENOSIN-5'-YL)(METHYL)SULFONIUM (Synonym)
C13 H21 N6 O4 S
RMAOLICYOBWFLA-OCVRIJAPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PLP
Query on PLP

A PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MES
Query on MES

A 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.199
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 105.00 α = 90.00
b = 61.33 β = 123.48
c = 76.94 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-07-03
  • Released Date: 2003-04-22
  • Deposition author(s): Capitani, G., Eliot, A.C., Gut, H., Khomutov, R.M., Kirsch, J.F., Grutter, M.G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values