1M3H

Crystal Structure of Hogg1 D268E Mutant with Product Oligonucleotide

Structural Biology Knowledgebase: 1M3H SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.239

Literature

Macromolecules
Sequence Display for 1M3H

Classification: HYDROLASE / DNA

Total Structure Weight: 44687.66


Macromolecule Entities
Molecule Chains Length Organism Details
8-Oxoguanine DNA Glycosylase A 317 Homo sapiens EC#: 3.2.2 IUBMB
Fragment: core fragment (residues 12-325)
Mutation: D268E
Gene Name(s): OGG1 Gene View MMH MUTM OGH1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3' B 15 synthetic
5'-D(P*GP*CP*GP*TP*CP*CP*AP*(DDX))-3' C 8 synthetic
5'-D(P*GP*TP*CP*TP*AP*CP*C)-3' D 7 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

C CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
DDX
Query on DDX
C DNA LINKING C5 H9 O6 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.239
  • Space Group: P 65 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 92.35 α = 90.00
b = 92.35 β = 90.00
c = 211.35 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-06-27
  • Released Date: 2004-04-20
  • Deposition author(s): Chung, S.J., Verdine, G.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4