1M3D

Structure of Type IV Collagen NC1 Domains


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.169

Literature

Macromolecules
Sequence Display for 1M3D

Classification: STRUCTURAL PROTEIN

Total Structure Weight: 307846.47

Macromolecule Entities
Molecule Chains Length Organism Details
Type IV Collagen Noncollagenous Domain- Alpha1 A, B, D..., E, G, H, J, KA, B, D, E, G, H, J, K 229 Bos taurus Fragment: NC1 domain (Residues 1-229)
Gene Name(s): COL4A1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Type IV Collagen Noncollagenous Domain- Alpha2 C, F, I, L 227 Bos taurus Fragment: NC1 domain (Residues 1-227)
Gene Name(s): COL4A2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LU
Query on LU

C, F, I, L LUTETIUM (III) ION
LU (Synonym)
Lu
PSDMOPINLDTFSZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B, D, E, G, H, J, K GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BR
Query on BR

A, B, C, D, E, F, G, H, I, J, K, L BROMIDE ION
Br
CPELXLSAUQHCOX-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.169
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 80.07 α = 90.00
b = 137.96 β = 90.31
c = 127.13 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-06-27
  • Released Date: 2003-01-07
  • Deposition author(s): Sundaramoorthy, M., Meiyappan, M., Todd, P., Hudson, B.G.

Revision History

  • Version 1_0: 2003-01-07

    Type: Initial release

  • Version 1_1: 2008-04-28

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Non-polymer description, Version format compliance