1LXY

Crystal Structure of Arginine Deiminase covalently linked with L-citrulline

Structural Biology Knowledgebase: 1LXY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 1LXY

Classification: HYDROLASE

Total Structure Weight: 93459.59

Macromolecule Entities
Molecule Chains Length Organism Details
Arginine Deiminase A, B 409 Mycoplasma arginini EC#: 3.5.3.6 IUBMB
Details: 5-fold pseudosymmetric guanidino group modifying enzyme
Gene Name(s): arcA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CIR
Query on CIR

A, B CITRULLINE
C6 H13 N3 O3
RHGKLRLOHDJJDR-BYPYZUCNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TRS
Query on TRS

A, B 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.186
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 77.24 α = 90.00
b = 76.37 β = 109.74
c = 82.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-06-06
  • Released Date: 2004-01-20
  • Deposition author(s): Das, K., Buttler, G.H., Kwiatkowski, V., Yadav, P., Arnold, E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4