1LX5

Crystal Structure of the BMP7/ActRII Extracellular Domain Complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.238

Literature

Macromolecules
Sequence Display for 1LX5

Classification: GROWTH FACTOR / GROWTH FACTOR RECEPTOR

Total Structure Weight: 29324.63

Macromolecule Entities
Molecule Chains Length Organism Details
bone morphogenetic protein 7 A 139 Homo sapiens Gene Name(s): BMP7 Gene View OP1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Activin Type II Receptor B 102 Mus musculus EC#: 2.7.11.30 IUBMB
Fragment: Extracellular Ligand Binding Domain, C-terminal truncation
Gene Name(s): Acvr2a Acvr2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDG
Query on NDG

B 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
C8 H15 N O6
OVRNDRQMDRJTHS-PVFLNQBWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.238
  • Space Group: P 62 2 2

Unit Cell:

Length (Å) Angle (°)
a = 140.92 α = 90.00
b = 140.92 β = 90.00
c = 90.81 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-06-04
  • Released Date: 2003-04-01
  • Deposition author(s): Greenwald, J., Groppe, J., Kwiatkowski, W., Choe, S.

Revision History

  • 2008-04-28
    Type: Version format compliance
  • 2011-07-13
    Type: Derived calculations, Version format compliance
  • 2015-01-21
    Type: Refinement description