1LWW

Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-bromoguanine

Structural Biology Knowledgebase: 1LWW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.236

Literature

Macromolecules
Sequence Display for 1LWW

Classification: HYDROLASE / DNA

Total Structure Weight: 45698.53


Macromolecule Entities
Molecule Chains Length Organism Details
8-OXOGUANINE DNA GLYCOSYLASE A 324 Homo sapiens EC#: 3.2.2 IUBMB
Fragment: CORE FRAGMENT (RESIDUES 12 TO 327)
Gene Name(s): OGG1 Gene View MMH MUTM OGH1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3' D 15 synthetic
5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3' E 15 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BRG
Query on BRG

A 8-BROMOGUANINE
C5 H4 Br N5 O
CRYCZDRIXVHNQB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

E CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PED
Query on PED
E NON-POLYMER C5 H13 O6 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.236
  • Space Group: P 65 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 92.17 α = 90.00
b = 92.17 β = 90.00
c = 211.89 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-06-03
  • Released Date: 2003-02-25
  • Deposition author(s): Fromme, J.C., Bruner, S.D., Yang, W., Karplus, M., Verdine, G.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4